Piece-Wise Exponential Additive Mixed Modeling Tools


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Documentation for package ‘pammtools’ version 0.0.3.1

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pammtools-package pammtools: Piece-wise exponential Additive Mixed Modeling tools.
add_cumu_hazard Add predicted hazard to data set
add_hazard Add predicted hazard to data set
add_surv_prob Add survival probability estimates to data set
add_term Add info about term effects to data set
combine_df Combines multiple data frames
fill 'tidyr' Verbs for 'ped'-Objects
fill.ped 'tidyr' Verbs for 'ped'-Objects
fill_ 'tidyr' Verbs for 'ped'-Objects
GeomStepribbon Step ribbon plots.
geom_stepribbon Step ribbon plots.
get_intervals Information on intervals in which times fall
get_intervals.default Information on intervals in which times fall
get_plotinfo Extract plot information for all special model terms
get_terms Extract the partial effects of non-linear model terms
gg_fixed Forrest plot of fixed coefficients
gg_re Plot Normal QQ plots for random effects
gg_tensor Plot tensor product effects
int_info Create start/end times and interval information
int_info.default Create start/end times and interval information
int_info.pamm Create start/end times and interval information
int_info.ped Create start/end times and interval information
make_newdata Construct a data frame suitable for prediction
make_newdata.default Construct a data frame suitable for prediction
make_newdata.ped Construct a data frame suitable for prediction
pammtools pammtools: Piece-wise exponential Additive Mixed Modeling tools.
ped_info Extract interval information and median/modus values for covariates
plot_df Extract information for plotting step functions
riskset_info Extract risk set information for each interval.
sample_info Extract information of the sample contained in a data set
sample_info.data.frame Extract information of the sample contained in a data set
sample_info.ped Extract information of the sample contained in a data set
split_data Function to transform data without time-dependent covariates into piece-wise exponential data format
split_tdc Create piece-wise exponential data in case of time-dependent covariates
tidyr_verbs 'tidyr' Verbs for 'ped'-Objects
tidy_re Extract random effects objects in tidy data format.
tidy_smooth Extract 1d smooth objects in tidy data format.
tidy_smooth2d Extract 2d smooth objects in tidy format.